データ分析環境 R+python

FROM jupyter/datascience-notebook

USER root

# .ipython/profile_default/startup/01-startup.ipy でデフォルトでロードされるモジュールを定義
ADD 01-startup.ipy /home/jovyan/.ipython/profile_default/startup/
RUN chown jovyan:users -R /home/jovyan/.ipython

RUN apt-get update && \
    apt-get install -y --no-install-recommends \
         fonts-ipafont graphviz libgraphviz-dev graphviz-dev pkg-config -y --no-install-recommends && \
    rm -rf /var/lib/apt/lists/*

RUN pip install --upgrade pip

USER $NB_UID

# Jupyter notebook extensions <https://github.com/ipython-contrib/jupyter_contrib_nbextensions> の設定
RUN pip install jupyter_contrib_nbextensions
RUN jupyter contrib nbextension install --user

RUN pip install tensorflow==1.10.0 numpy==1.14.5 pandas
RUN pip install openpyxl pymc3 plotnine pyarrow opencv-python keras plydata networkx --upgrade
RUN pip install sympy
RUN pip install scikit-misc graphviz
RUN pip install redis
RUN pip install xlsxwriter
RUN pip install flask flask-wtf flask-bootstrap

# fontList.jsonを消しておくと、フォント変更後にmatplotlib.font_manager._rebuild() する必要がない。<https://qiita.com/yniji/items/3fac25c2ffa316990d0c>
RUN rm .cache/matplotlib/fontList.json

RUN jupyter nbextension enable tox2/main
RUN jupyter nbextension enable nbextensions_configurator/tree_tab/main

import pandas as pd
import numpy as np
import seaborn as sns
import scipy.stats as stats
import matplotlib
from matplotlib import pylab as plt
from IPython.display import display, HTML
import statsmodels.api as sm
from statsmodels.formula.api import ols
from rpy2.robjects import r as R
%load_ext rpy2.ipython
%matplotlib inline

version: '2.3'
services:
  official:
    restart: always
    build: official/.
    container_name: myjupyter
    ports:
       - "8888:8888"
       - "5000:5000"
    volumes:
       - ~/projects/myjupyter:/home/jovyan/myjupyter
       - ~/.keras:/home/jovyan/.keras
    command: "start-notebook.sh --NotebookApp.token=''"
    links:
      - redis

  redis:
    restart: always
    image: redis
    volumes:
      - ~/tmp/redis:/data
    command: redis-server --appendonly yes